New code discovered in DNA

[C1ay]

DNA - the long, thin molecule that carries our hereditary material - is compressed around protein scaffolding in the cell nucleus into tiny spheres called nucleosomes. The bead-like nucleosomes are strung along the entire chromosome, which is itself folded and packaged to fit into the nucleus. What determines how, when and where a nucleosome will be positioned along the DNA sequence? Dr. Eran Segal and research student Yair Field of the Computer Science and Applied Mathematics Department at the Weizmann Institute of Science have succeeded, together with colleagues from Northwestern University in Chicago, in cracking the genetic code that sets the rules for where on the DNA strand the nucleosomes will be situated. Their findings appeared today in Nature.

 

The precise location of the nucleosomes along the DNA is known to play an important role in the cell's day to day function, since access to DNA wrapped in a nucleosome is blocked for many proteins, including those responsible for some of life's most basic processes. Among these barred proteins are factors that initiate DNA replication, transcription (the transfer of genetic information from DNA to RNA) and DNA repair. Thus, the positioning of nucleosomes defines the segments in which these processes can and can't take place. These limitations are considerable: Most of the DNA is packaged into nucleosomes. A single nucleosome contains about 150 genetic bases (the "letters" that make up a genetic sequence), while the free area between neighboring nucleosomes is only about 20 bases long. It is in these nucleosome-free regions that processes such as transcription can be initiated.

 

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[HydrogenBond]

This is not that new. The spacer regions between nucleosomes is composed of base pairs with lower hydrogen bonding potential value. When the cellular aqueous hydrogen bonding potential changes, this creates equilibrium for unpacking enzymes. During cells cycles the hydrogen bonding potential is more extreme, allowing equilibirum for unpacking enzymes that leads to the duplication of the DNA. It took 1min using hydrogen bonding analysis, at no cost. The alternative is $millions and years to get the same result. Alchemy should be outlawed since it is so slow and wasteful. On the positive side alchemy creates long term job security.